If you want to record it clean without any FX route it to the master like it should be already then just enable the ARM recording button for that channel, enable record and it will record into the playlist. Route to track 1 then to the master channel for example so everything gets properly delay compensated
To avoid further delay issues try and avoid having your channels routed only to the master mixer channel. Youre going to want to to go to macros and click on enable smart disable for all plug ins then disable the FX at the bottom for as many mixer channels as possible when you record otherwise it will all add to the delay.